commonCellConstants.h

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/*
This file is part of the HemoCell library
 
HemoCell is developed and maintained by the Computational Science Lab 
in the University of Amsterdam. Any questions or remarks regarding this library 
can be sent to: info@hemocell.eu
 
When using the HemoCell library in scientific work please cite the
corresponding paper: https://doi.org/10.3389/fphys.2017.00563
 
The HemoCell library is free software: you can redistribute it and/or
modify it under the terms of the GNU Affero General Public License as
published by the Free Software Foundation, either version 3 of the
License, or (at your option) any later version.
 
The library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU Affero General Public License for more details.
 
You should have received a copy of the GNU Affero General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
//Necessary since cellMechanics needs more than the forward declaration
#include "cellMechanics.h"
 
#ifndef Hemo_CommonCellConstants_H
#define Hemo_CommonCellConstants_H
 
namespace hemo {
class CommonCellConstants;
}
#include "geometryUtils.h"
#include "config.h"
#include "hemoCellField.h"
 
namespace hemo {
 
class CommonCellConstants {
  private:
  CommonCellConstants(HemoCellField & cellField_,
                      std::vector<hemo::Array<plint,3>> triangle_list_,
                      std::vector<hemo::Array<plint,2>> edge_list_,
                      std::vector<T> edge_length_eq_list_,
                      std::vector<T> edge_angle_eq_list_,
                      std::vector<T> surface_patch_center_dist_eq_list,
                      std::vector<hemo::Array<plint,2>> edge_bending_triangles_list_,
                      std::vector<hemo::Array<plint,2>> edge_bending_triangles_outer_points_,
                      std::vector<T> triangle_area_eq_list_,
                      std::vector<hemo::Array<plint,6>> vertex_vertexes_,
                      std::vector<hemo::Array<plint,6>> vertex_edges_,
                      std::vector<hemo::Array<signed int,6>> vertex_edges_sign_,
                      std::vector<unsigned int> vertex_n_vertexes_,
                      std::vector<hemo::Array<hemo::Array<plint,2>,6>> vertex_outer_edges_per_vertex_,
                      std::vector<hemo::Array<hemo::Array<signed int,2>,6>> vertex_outer_edges_per_vertex_sign_,
                      T volume_eq_, T area_mean_eq_,
                      T edge_mean_eq_, T angle_mean_eq_,
                      std::vector<hemo::Array<plint,2>> inner_edge_list_,
                      std::vector<T> inner_edge_length_eq_list_);
  public: 
  static CommonCellConstants CommonCellConstantsConstructor(HemoCellField &, hemo::Config & modelCfg_);
 
  HemoCellField & cellField;
  const std::vector<hemo::Array<plint,3>> triangle_list;
  const std::vector<hemo::Array<plint,2>> edge_list;
 
  const std::vector<T> edge_length_eq_list;
  const std::vector<T> edge_angle_eq_list;
  const std::vector<T> surface_patch_center_dist_eq_list;
  const std::vector<hemo::Array<plint,2>> edge_bending_triangles_list;
  const std::vector<hemo::Array<plint,2>> edge_bending_triangles_outer_points;
  const std::vector<T> triangle_area_eq_list;
  const std::vector<hemo::Array<plint,6>> vertex_vertexes;
  const std::vector<hemo::Array<plint,6>> vertex_edges;
  const std::vector<hemo::Array<signed int,6>> vertex_edges_sign;
  const std::vector<unsigned int> vertex_n_vertexes;
  const std::vector<hemo::Array<hemo::Array<plint,2>,6>> vertex_outer_edges_per_vertex;
  const std::vector<hemo::Array<hemo::Array<signed int,2>,6>> vertex_outer_edges_per_vertex_sign;
 
  const T volume_eq;
  const T area_mean_eq;
  const T edge_mean_eq;
  const T angle_mean_eq;
  const std::vector<hemo::Array<plint,2>> inner_edge_list;
  const std::vector<T> inner_edge_length_eq_list;
 
};
}
#endif